Deprecated List (Artisynth API documentation)

Deprecated Classes
Class and Description
artisynth.core.materials.CubicHyperelastic This class has been replaced by the more general `YeohMaterial`, which should be used instead.
artisynth.core.inverse.ForceTarget Class has been replaced by ConstraintForceTarget for greater clarity.
artisynth.core.inverse.ForceTargetTerm Class has been replaced by ConstraintForceTerm for greater clarity.
artisynth.core.materials.FungMaterial This class has been replaced by the more descriptively named `FungOrthotropicMaterial`, which should be used instead.
artisynth.core.materials.Millard2012AxialLigament This class has been replaced by the more appropriately named `Millard2012AxialTendon`, which should be used instead.
artisynth.core.mechmodels.RigidCompositeBody the functionality offered is now provided by `RigidBody`.

Deprecated Enums
Enum and Description
artisynth.core.inverse.FrameExciter.WrenchComponent Use `FrameExciter.WrenchDof` instead.
artisynth.core.inverse.PointExciter.PointForceComponent Use `PointExciter.ForceDof` instead.

Deprecated Fields
Field and Description
artisynth.core.materials.ContactForceBehavior.TWO_WAY_CONTACT This flag is no longer set. Instead, for two-way contact, the `contactArea` argument of `ContactForceBehavior.computeResponse(double[], double, artisynth.core.modelbase.ContactPoint, artisynth.core.modelbase.ContactPoint, maspack.matrix.Vector3d, double, int)` is halved for vertex contacts, so that no further scaling is required.

Deprecated Methods
Method and Description
artisynth.core.inverse.TrackingController.addDampingTerm() Use `TrackingController.setExcitationDamping()` instead.
artisynth.core.inverse.TrackingController.addDampingTerm(double) Use `TrackingController.setExcitationDamping(double)` instead.
artisynth.core.femmodels.SkinMeshBody.addFemModel(FemModel3d) Use `SkinMeshBody.addMasterBody(artisynth.core.modelbase.ModelComponent)` instead
artisynth.core.inverse.ForceEffectorTerm.addForce(ForceTargetComponent) Use `ForceEffectorTerm.addTarget(ForceTargetComponent)` instead.
artisynth.core.inverse.ForceEffectorTerm.addForce(ForceTargetComponent, double, boolean) Use `ForceEffectorTerm.addTarget(ForceTargetComponent,double,boolean)` instead.
artisynth.core.inverse.TrackingController.addForceEffectorTerm() The force effector term is now allocated on demand by `TrackingController.getForceEffectorTerm()` and other methods.
artisynth.core.inverse.ConstraintForceTerm.addForceTarget(BodyConnector) Use `ConstraintForceTerm.addTarget(BodyConnector)` instead.
artisynth.core.inverse.ConstraintForceTerm.addForceTarget(BodyConnector, double) Use `ConstraintForceTerm.addTarget(BodyConnector,double)` instead.
artisynth.core.inverse.ConstraintForceTerm.addForceTarget(BodyConnector, VectorNd) Use `ConstraintForceTerm.addTarget(BodyConnector,VectorNd)` instead.
artisynth.core.inverse.ConstraintForceTerm.addForceTarget(BodyConnector, VectorNd, double) Use `ConstraintForceTerm.addTarget(BodyConnector,VectorNd,double)` instead.
artisynth.core.inverse.TrackingController.addForceTargetTerm() Replaced by `TrackingController.getConstraintForceTerm()`
artisynth.core.femmodels.SkinMeshBody.addFrame(Frame) Use `SkinMeshBody.addMasterBody(artisynth.core.modelbase.ModelComponent)` instead
artisynth.core.inverse.TrackingController.addL2RegularizationTerm() Use `TrackingController.setL2Regularization()` instead.
artisynth.core.inverse.TrackingController.addL2RegularizationTerm(double) Use `TrackingController.setL2Regularization(double)` instead.
artisynth.core.inverse.TrackingController.addMotionTarget(MotionTargetComponent) Use `TrackingController.addPointTarget(Point)` or `TrackingController.addFrameTarget(Frame)` instead.
artisynth.core.inverse.TrackingController.addMotionTarget(MotionTargetComponent, double) Use `TrackingController.addPointTarget(Point,double)` or `TrackingController.addFrameTarget(Frame,double)` instead.
artisynth.core.femmodels.FemNodeNeighbor.addPosJacobian(Matrix3d, double)
artisynth.core.inverse.TrackingController.addRegularizationTerms(Double, Double) Use `TrackingController.setRegularization(double,double)` instead.
artisynth.core.inverse.MotionTargetTerm.addTarget(MotionTargetComponent) Use `MotionTargetTerm.addPointTarget(Point)` or `MotionTargetTerm.addFrameTarget(Frame)` instead.
artisynth.core.inverse.MotionTargetTerm.addTarget(MotionTargetComponent, double) Use `MotionTargetTerm.addPointTarget(Point,double)` or `MotionTargetTerm.addFrameTarget(Frame,double)` instead.
artisynth.core.mechmodels.Frame.computeAppliedWrench(Wrench, Vector3d, Vector3d)
artisynth.core.materials.ContactForceBehavior.computeContactArea(ContactPoint, ContactPoint, Vector3d) The contact area is now supplied directly to `ContactForceBehavior.computeResponse(double[], double, artisynth.core.modelbase.ContactPoint, artisynth.core.modelbase.ContactPoint, maspack.matrix.Vector3d, double, int)` via its `contactArea` argument, which should be used instead. Note that for two-way vertex contact, the value returned by this method is twice the effective area supplied by `contactArea`.
artisynth.core.femmodels.SkinMeshBody.computeWeights() Use `SkinMeshBody.computeAllVertexConnections()` instead.
artisynth.core.probes.VelocityInputProbe.createInterpolated(String, NumericProbeBase, double) Use `VelocityInputProbe.createInterpolated(String,NumericProbeBase,boolean,double)` instead. This method calls that method with `useTargetProps` set to `false`,
artisynth.core.probes.IKSolver.createMarkerPositionProbe(String, NumericProbeBase, double) Use `IKSolver.createMarkerPositionProbe(String,NumericProbeBase,boolean,double)` instead. This method calls that method with `useTargetProps` set to `false`.
artisynth.core.probes.IKSolver.createMarkerPositionProbe(String, String, double) Use `IKSolver.createMarkerPositionProbe(String,String,boolean,double)` instead. This method calls that method with `useTargetProps` set to `false`.
artisynth.core.probes.VelocityInputProbe.createNumeric(String, NumericProbeBase, double) Use `VelocityInputProbe.createNumeric(String,NumericProbeBase,boolean,double)` instead. This method calls that method with `useTargetProps` set to `false`,
maspack.fileutil.jsch.IdentityFile.decrypt() This method should not be invoked.
artisynth.core.mechmodels.BodyConnector.getActivation(int) Use `BodyConnector.getConstraintForce(int)` instead.
artisynth.core.mechmodels.CollisionManager.getBodyFaceContact() Use `CollisionManager.getVertexPenetrations()` `= VertexPenetrations.BOTH_COLLIDABLES` instead.
artisynth.core.mechmodels.CollisionBehavior.getBodyFaceContact() Use `CollisionBehavior.getVertexPenetrations()` `= VertexPenetrations.BOTH_COLLIDABLES` instead.
artisynth.core.femmodels.FemModel3d.getByNumber(int) use `FemModel3d.getNodeByNumber(int)` instead
artisynth.core.mechmodels.CollisionManager.getColorMapCollidable() Use `CollisionManager.getRenderingCollidable()` instead.
artisynth.core.mechmodels.CollisionBehavior.getColorMapCollidable() Use `CollisionBehavior.getRenderingCollidable()` instead.
artisynth.core.inverse.TrackingController.getDampingTerm() Use `TrackingController.getExcitationDampingTerm()` instead.
artisynth.core.mechmodels.CollisionBehavior.getDrawPenetrationDepth() Replaced by the combination of `CollisionBehavior.getDrawColorMap()` and `getRenderingCollidable`.
artisynth.core.femmodels.FemNode3d.getElementDependencies()
artisynth.core.femmodels.FemModel.getEnergy() Use `FemModel.getKineticEnergy()` instead.
maspack.matrix.RotationMatrix3d.getEuler(double[]) Use `RotationMatrix3d.getZyzAngles(double[])` instead.
artisynth.core.inverse.ConstraintForceTerm.getForceTargets() Use `ConstraintForceTerm.getTargets()` instead.
artisynth.core.inverse.TrackingController.getForceTargetTerm() Replaced by `TrackingController.getConstraintForceTerm()`
artisynth.core.opensim.OpenSimParser.getGeometryPath() Use `OpenSimParser.getGeometryFolder()` instead.
artisynth.core.materials.EquilibriumAxialMuscle.getIgnoreTendonCompliance() Use `EquilibriumAxialMuscle.hasRigidTendon()` instead.
artisynth.core.mechmodels.FrameSpring.getInitialT21() Use `FrameSpring.getRestPose()` instead.
artisynth.core.mechmodels.RigidBody.getMesh() Use `RigidBody.getSurfaceMesh()` instead.
artisynth.core.inverse.TrackingController.getNormalizeH() Use `TrackingController.getNormalizeCostTerms()` intead.
artisynth.core.probes.TRCReader.getNumFrames() Use `TRCReader.numFrames()` instead.
artisynth.core.probes.TRCReader.getNumMarkers() Use `TRCReader.numMarkers()` instead.
maspack.matrix.RotationMatrix3d.getRpy(double[]) Use `RotationMatrix3d.getZyxAngles(double[])` instead.
artisynth.core.mechmodels.FrameSpring.getTDC0() Use `FrameSpring.getRestPose()` instead.
artisynth.core.probes.NumericProbeBase.getValues() Use `NumericProbeBase.getData()` instead.
artisynth.core.util.ArtisynthPath.getWorkingDir() replaced by `ArtisynthPath.getWorkingFolder()`
maspack.matrix.RotationMatrix3d.getXyz(double[]) Use `RotationMatrix3d.getXyzAngles(double[])` instead.
artisynth.core.mechmodels.MultiPointSpring.initializeSegment(int, Point3d[]) Use `MultiPointSpring.setInitializingPoints(int, maspack.matrix.Point3d[])` instead.
artisynth.core.mechmodels.FrameSpring.initializeTDC0() Use `FrameSpring.initializeRestPose()` instead.
maspack.solvers.DirectSolver.iterativeSolve(double[], double[], double[], int) use `DirectSolver.setIterativeTolerance(double)` and `DirectSolver.iterativeSolve(double[],double[],double[])` instead
maspack.solvers.PardisoSolver.iterativeSolve(double[], double[], int) use `DirectSolverBase.setIterativeTolerance(double)` and `PardisoSolver.iterativeSolve(double[],double[])` instead
maspack.solvers.PardisoSolver.iterativeSolve(VectorNd, VectorNd, int) use `DirectSolverBase.setIterativeTolerance(double)` and `PardisoSolver.iterativeSolve(VectorNd,VectorNd)` instead
artisynth.core.inverse.TrackingController.removeDampingTerm() Use `TrackingController.removeExcitationDamping()` instead.
artisynth.core.inverse.TrackingController.removeForceEffectorTerm() The force effector term now remains in place once allocated. This method does nothing and returns `false`.
artisynth.core.inverse.TrackingController.removeForceTargetTerm() The constraint force term now remains in place once allocated. This method therefore does nothing.
artisynth.core.inverse.TrackingController.removeL2RegularizationTerm() Use `TrackingController.removeL2Regularization()` instead.
artisynth.core.mechmodels.CollisionManager.setBodyFaceContact(boolean) Use `CollisionManager.setVertexPenetrations(artisynth.core.mechmodels.CollisionBehavior.VertexPenetrations)` instead.
artisynth.core.mechmodels.CollisionBehavior.setBodyFaceContact(boolean) Use `CollisionBehavior.setVertexPenetrations(artisynth.core.mechmodels.CollisionBehavior.VertexPenetrations)` instead.
artisynth.core.mechmodels.CollisionManager.setColorMapCollidable(int) Use `CollisionManager.setRenderingCollidable(int)` instead.
artisynth.core.mechmodels.CollisionBehavior.setColorMapCollidable(int) Use `CollisionBehavior.setRenderingCollidable(int)` instead.
artisynth.core.mechmodels.CollisionBehavior.setDrawPenetrationDepth(int) Replaced by the combination of `CollisionBehavior.setDrawColorMap(artisynth.core.mechmodels.CollisionBehavior.ColorMapType)` and `setRenderingCollidable`.
maspack.matrix.RotationMatrix3d.setEuler(double[]) Use `RotationMatrix3d.setZyzAngles(double[])` instead.
maspack.matrix.RotationMatrix3d.setEuler(double, double, double) Use `RotationMatrix3d.setZyzAngles(double,double,double)` instead.
artisynth.core.materials.EquilibriumAxialMuscle.setIgnoreTendonCompliance(boolean) Use `EquilibriumAxialMuscle.setRigidTendon(boolean)` instead.
artisynth.core.mechmodels.FrameSpring.setInitialT21() Use `FrameSpring.initializeRestPose()` instead.
artisynth.core.mechmodels.FrameSpring.setInitialT21(RigidTransform3d) Use `FrameSpring.setRestPose(maspack.matrix.RigidTransform3d)` instead.
artisynth.core.mechmodels.RigidBody.setMesh(PolygonalMesh) Use `RigidBody.setSurfaceMesh(PolygonalMesh)` instead.
artisynth.core.mechmodels.RigidBody.setMesh(PolygonalMesh, String) Use `RigidBody.setSurfaceMesh(PolygonalMesh,String)` instead.
artisynth.core.mechmodels.RigidBody.setMesh(PolygonalMesh, String, AffineTransform3dBase) Use `RigidBody.setSurfaceMesh(PolygonalMesh,String,AffineTransform3dBase)` instead.
artisynth.core.inverse.TrackingController.setNormalizeH(boolean) Use `TrackingController.setNormalizeCostTerms(boolean)` intead.
maspack.matrix.RotationMatrix3d.setRpy(double[]) Use `RotationMatrix3d.setZyxAngles(double[])` instead.
maspack.matrix.RotationMatrix3d.setRpy(double, double, double) Use `RotationMatrix3d.setZyxAngles(double,double,double)` instead.
artisynth.core.mechmodels.FrameSpring.setTDC0(RigidTransform3d) Use `FrameSpring.setRestPose(maspack.matrix.RigidTransform3d)` instead.
artisynth.core.probes.NumericProbeBase.setValues(double[][]) Use `NumericProbeBase.setData(double[][])` instead.
artisynth.core.probes.NumericProbeBase.setValues(NumericProbeBase, boolean) Use `NumericProbeBase.setData(NumericProbeBase,boolean)` instead.
artisynth.core.util.ArtisynthPath.setWorkingDir(File) replaced by `ArtisynthPath.setWorkingFolder(java.io.File)`
maspack.matrix.RotationMatrix3d.setXyz(double[]) Use `RotationMatrix3d.setXyzAngles(double[])` instead.
maspack.matrix.RotationMatrix3d.setXyz(double, double, double) Use `RotationMatrix3d.setXyzAngles(double,double,double)` instead.

Deprecated Constructors
Constructor and Description
artisynth.core.materials.ConstantAxialMuscle(double) For historical reasons, this constructor sets the deprecated `forceScaling` property to 1000, thuis scaling the effective value of `fmax`.
artisynth.core.inverse.FrameExciter(Frame, FrameExciter.WrenchComponent, double) Use `FrameExciter.FrameExciter(String,Frame,WrenchDof,double)` instead.
artisynth.core.inverse.FrameExciter(String, Frame, FrameExciter.WrenchComponent, double) Use `FrameExciter.FrameExciter(String,Frame,WrenchDof,double)` instead.
artisynth.core.materials.LinearAxialMuscle(double, double) For historical reasons, this constructor sets the deprecated `forceScaling` property to 1000, thuis scaling the effective value of `fmax`.
artisynth.core.materials.PaiAxialMuscle(double, double, double, double, double) For historical reasons, this constructor sets the deprecated `forceScaling` property to 1000, thus scaling the effective value of `fmax`.
artisynth.core.materials.PaiAxialMuscle(double, double, double, double, double, double) For historical reasons, this constructor sets the deprecated `forceScaling` property to 1000, this scaling the effective values of `fmax` and `damping`.
artisynth.core.materials.PeckAxialMuscle(double, double, double, double, double) For historical reasons, this constructor sets the deprecated `forceScaling` property to 1000, thus scaling the effective value of `fmax`.
artisynth.core.materials.PeckAxialMuscle(double, double, double, double, double, double) For historical reasons, this constructor sets the deprecated `forceScaling` property to 1000, thus scaling the effective values of `fmax` and `damping`.
artisynth.core.inverse.PointExciter(Point, PointExciter.PointForceComponent, double) Use `PointExciter.PointExciter(Point,ForceDof,double)` instead.
artisynth.core.inverse.PointExciter(String, Point, PointExciter.PointForceComponent, double) Use `PointExciter.PointExciter(String,Point,ForceDof,double)` instead.

Deprecated API

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